Proceedings Of The Seventh Workshop On Algorithm Engineering And Experiments And The Second Workshop On Analytic Algorithmics And Combinatorics
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Proceedings of the Seventh Workshop on Algorithm Engineering and Experiments and the Second Workshop on Analytic Algorithmics and Combinatorics
Author: Camil Demetrescu
language: en
Publisher: Society for Industrial and Applied Mathematics (SIAM)
Release Date: 2005
Presents the aim of the annual ALENEX workshop, which is to provide a forum for the presentation of original research in the implementation and experimental evaluation of algorithms and data structures.
Combinatorics of Genome Rearrangements
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.
Proceedings of the Eighth Workshop on Algorithm Engineering and Experiments and the Third Workshop on Analytic Algorithmics and Combinatorics
The annual Workshop on Algorithm Engineering and Experiments (ALENEX) provides a forum for the presentation of original research in all aspects of algorithm engineering, including the implementation and experimental evaluation of algorithms and data structures. The workshop was sponsored by SIAM, the Society for Industrial and Applied Mathematics, and SIGACT, the ACM Special Interest Group on Algorithms and Computation Theory. The aim of ANALCO is to provide a forum for the presentation of original research in the analysis of algorithms and associated combinatorial structures.