Phylogenetic Combinatorics
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Basic Phylogenetic Combinatorics
Author: Andreas Dress
language: en
Publisher: Cambridge University Press
Release Date: 2012
The first book to systematically introduce the emerging area of phylogenetic combinatorics.
Computing and Combinatorics
This book constitutes the refereed proceedings of the 22nd International Conference on Computing and Combinatorics, COCOON 2016, held in Ho Chi Minh City, Vietnam, in August 2016. The 50 revised full papers papers presented in this book were carefully reviewed and selected from various submissions. The papers cover various topics including: Theory and Algorithms; Parameterized Complexity and Algorithms; Database and Data Structures; Computational Complexity; Approximation Algorithms; Cryptography; Network and Algorithms; Graph Theory and Algorithms; Computational Geometry; Scheduling Algorithms and Circuit Complexity; Computational Geometry and Computational Biology; and Logic, Algebra and Automata.
Combinatorics of Genome Rearrangements
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.