Master Modeler Series Vol 2

MASTER MODELER SERIES VOL 2

Beyond First Order Model Theory, Volume II

Model theory is the meta-mathematical study of the concept of mathematical truth. After Afred Tarski coined the term Theory of Models in the early 1950’s, it rapidly became one of the central most active branches of mathematical logic. In the last few decades, ideas that originated within model theory have provided powerful tools to solve problems in a variety of areas of classical mathematics, including algebra, combinatorics, geometry, number theory, and Banach space theory and operator theory. The two volumes of Beyond First Order Model Theory present the reader with a fairly comprehensive vista, rich in width and depth, of some of the most active areas of contemporary research in model theory beyond the realm of the classical first-order viewpoint. Each chapter is intended to serve both as an introduction to a current direction in model theory and as a presentation of results that are not available elsewhere. All the articles are written so that they can be studied independently of one another. This second volume contains introductions to real-valued logic and applications, abstract elementary classes and applications, interconnections between model theory and function spaces, nonstucture theory, and model theory of second-order logic. Features A coherent introduction to current trends in model theory. Contains articles by some of the most influential logicians of the last hundred years. No other publication brings these distinguished authors together. Suitable as a reference for advanced undergraduate, postgraduates, and researchers. Material presented in the book (e.g, abstract elementary classes, first-order logics with dependent sorts, and applications of infinitary logics in set theory) is not easily accessible in the current literature. The various chapters in the book can be studied independently.

Logical Modeling of Biological Systems

Systems Biology is the systematic study of the interactions between the components of a biological system and studies how these interactions give rise to the function and behavior of the living system. Through this, a life process is to be understood as a whole system rather than the collection of the parts considered separately. Systems Biology is therefore more than just an emerging field: it represents a new way of thinking about biology with a dramatic impact on the way that research is performed. The logical approach provides an intuitive method to provide explanations based on an expressive relational language. This book covers various aspects of logical modeling of biological systems, bringing together 10 recent logic-based approaches to Systems Biology by leading scientists. The chapters cover the biological fields of gene regulatory networks, signaling networks, metabolic pathways, molecular interaction and network dynamics, and show logical methods for these domains based on propositional and first-order logic, logic programming, answer set programming, temporal logic, Boolean networks, Petri nets, process hitting, and abductive and inductive logic programming. It provides an excellent guide for all scientists, biologists, bioinformaticians, and engineers, who are interested in logic-based modeling of biological systems, and the authors hope that new scientists will be encouraged to join this exciting scientific endeavor.