Hierarchical Feature Selection For Knowledge Discovery

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Hierarchical Feature Selection for Knowledge Discovery

This book is the first work that systematically describes the procedure of data mining and knowledge discovery on Bioinformatics databases by using the state-of-the-art hierarchical feature selection algorithms. The novelties of this book are three-fold. To begin with, this book discusses the hierarchical feature selection in depth, which is generally a novel research area in Data Mining/Machine Learning. Seven different state-of-the-art hierarchical feature selection algorithms are discussed and evaluated by working with four types of interpretable classification algorithms (i.e. three types of Bayesian network classification algorithms and the k-nearest neighbours classification algorithm). Moreover, this book discusses the application of those hierarchical feature selection algorithms on the well-known Gene Ontology database, where the entries (terms) are hierarchically structured. Gene Ontology database that unifies the representations of gene and gene products annotation provides the resource for mining valuable knowledge about certain biological research topics, such as the Biology of Ageing. Furthermore, this book discusses the mined biological patterns by the hierarchical feature selection algorithms relevant to the ageing-associated genes. Those patterns reveal the potential ageing-associated factors that inspire future research directions for the Biology of Ageing research.
Hierarchical Feature Selection for Knowledge Discovery

This book is the first work that systematically describes the procedure of data mining and knowledge discovery on Bioinformatics databases by using the state-of-the-art hierarchical feature selection algorithms. The novelties of this book are three-fold. To begin with, this book discusses the hierarchical feature selection in depth, which is generally a novel research area in Data Mining/Machine Learning. Seven different state-of-the-art hierarchical feature selection algorithms are discussed and evaluated by working with four types of interpretable classification algorithms (i.e. three types of Bayesian network classification algorithms and the k-nearest neighbours classification algorithm). Moreover, this book discusses the application of those hierarchical feature selection algorithms on the well-known Gene Ontology database, where the entries (terms) are hierarchically structured. Gene Ontology database that unifies the representations of gene and gene products annotation provides the resource for mining valuable knowledge about certain biological research topics, such as the Biology of Ageing. Furthermore, this book discusses the mined biological patterns by the hierarchical feature selection algorithms relevant to the ageing-associated genes. Those patterns reveal the potential ageing-associated factors that inspire future research directions for the Biology of Ageing research.
Feature Selection for Knowledge Discovery and Data Mining

Author: Huan Liu
language: en
Publisher: Springer Science & Business Media
Release Date: 2012-12-06
As computer power grows and data collection technologies advance, a plethora of data is generated in almost every field where computers are used. The com puter generated data should be analyzed by computers; without the aid of computing technologies, it is certain that huge amounts of data collected will not ever be examined, let alone be used to our advantages. Even with today's advanced computer technologies (e. g. , machine learning and data mining sys tems), discovering knowledge from data can still be fiendishly hard due to the characteristics of the computer generated data. Taking its simplest form, raw data are represented in feature-values. The size of a dataset can be measUJ·ed in two dimensions, number of features (N) and number of instances (P). Both Nand P can be enormously large. This enormity may cause serious problems to many data mining systems. Feature selection is one of the long existing methods that deal with these problems. Its objective is to select a minimal subset of features according to some reasonable criteria so that the original task can be achieved equally well, if not better. By choosing a minimal subset offeatures, irrelevant and redundant features are removed according to the criterion. When N is reduced, the data space shrinks and in a sense, the data set is now a better representative of the whole data population. If necessary, the reduction of N can also give rise to the reduction of P by eliminating duplicates.