Cluster Analysis Example
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Elementary Cluster Analysis
The availability of packaged clustering programs means that anyone with data can easily do cluster analysis on it. But many users of this technology don't fully appreciate its many hidden dangers. In today's world of "grab and go algorithms," part of my motivation for writing this book is to provide users with a set of cautionary tales about cluster analysis, for it is very much an art as well as a science, and it is easy to stumble if you don't understand its pitfalls. Indeed, it is easy to trip over them even if you do! The parenthetical word usually in the title is very important, because all clustering algorithms can and do fail from time to time. Modern cluster analysis has become so technically intricate that it is often hard for the beginner or the non-specialist to appreciate and understand its many hidden dangers. Here's how Yogi Berra put it, and he was right: In theory there's no difference between theory and practice. In practice, there is ~Yogi Berra This book is a step backwards, to four classical methods for clustering in small, static data sets that have all withstood the tests of time. The youngest of the four methods is now almost 50 years old: Gaussian Mixture Decomposition (GMD, 1898) SAHN Clustering (principally single linkage (SL, 1909)) Hard c-means (HCM, 1956, also widely known as (aka) "k-means") Fuzzy c-means (FCM, 1973, reduces to HCM in a certain limit) The dates are the first known writing (to me, anyway) about these four models. I am (with apologies to Marvel Comics) very comfortable in calling HCM, FCM, GMD and SL the Fantastic Four. Cluster analysis is a vast topic. The overall picture in clustering is quite overwhelming, so any attempt to swim at the deep end of the pool in even a very specialized subfield requires a lot of training. But we all start out at the shallow end (or at least that's where we should start!), and this book is aimed squarely at teaching toddlers not to be afraid of the water. There is no section of this book that, if explored in real depth, cannot be expanded into its own volume. So, if your needs are for an in-depth treatment of all the latest developments in any topic in this volume, the best I can do - what I will try to do anyway - is lead you to the pool, and show you where to jump in.
Practical Guide to Cluster Analysis in R
Although there are several good books on unsupervised machine learning, we felt that many of them are too theoretical. This book provides practical guide to cluster analysis, elegant visualization and interpretation. It contains 5 parts. Part I provides a quick introduction to R and presents required R packages, as well as, data formats and dissimilarity measures for cluster analysis and visualization. Part II covers partitioning clustering methods, which subdivide the data sets into a set of k groups, where k is the number of groups pre-specified by the analyst. Partitioning clustering approaches include: K-means, K-Medoids (PAM) and CLARA algorithms. In Part III, we consider hierarchical clustering method, which is an alternative approach to partitioning clustering. The result of hierarchical clustering is a tree-based representation of the objects called dendrogram. In this part, we describe how to compute, visualize, interpret and compare dendrograms. Part IV describes clustering validation and evaluation strategies, which consists of measuring the goodness of clustering results. Among the chapters covered here, there are: Assessing clustering tendency, Determining the optimal number of clusters, Cluster validation statistics, Choosing the best clustering algorithms and Computing p-value for hierarchical clustering. Part V presents advanced clustering methods, including: Hierarchical k-means clustering, Fuzzy clustering, Model-based clustering and Density-based clustering.
Cluster Analysis
Cluster analysis comprises a range of methods for classifying multivariate data into subgroups. By organizing multivariate data into such subgroups, clustering can help reveal the characteristics of any structure or patterns present. These techniques have proven useful in a wide range of areas such as medicine, psychology, market research and bioinformatics. This fifth edition of the highly successful Cluster Analysis includes coverage of the latest developments in the field and a new chapter dealing with finite mixture models for structured data. Real life examples are used throughout to demonstrate the application of the theory, and figures are used extensively to illustrate graphical techniques. The book is comprehensive yet relatively non-mathematical, focusing on the practical aspects of cluster analysis. Key Features: • Presents a comprehensive guide to clustering techniques, with focus on the practical aspects of cluster analysis. • Provides a thorough revision of the fourth edition, including new developments in clustering longitudinal data and examples from bioinformatics and gene studies • Updates the chapter on mixture models to include recent developments and presents a new chapter on mixture modeling for structured data. Practitioners and researchers working in cluster analysis and data analysis will benefit from this book.